Tuesday, January 15, 2019

Are You Prepared to File Your Partnership Tax Return under the New Centralized Partnership Audit Rules?


As partners and members of U.S. partnerships and limited liability companies (or their CPAs) gleefully came back to work after ringing in the new year, many started a familiar process: preparation of their partnership’s tax return. This year, however, most have discovered a few changes to their partnership’s Form 1065 that will prompt some new questions like: “Can our partnership elect out of the centralized partnership audit regime under section 6221(b)?,” which will be quickly followed by “Wait, what is the centralized audit regime?” and “What is a partnership representative?” and “Do we have a partnership representative?” 

While these questions seem innocuous, they grow out of the largest change to the taxation of partnerships in over 30 years. In late 2015 Congress passed the Bipartisan Budget Act of 2015 (“BBA”). For all tax years beginning after December 31, 2017 (or starting with all 2018 tax years), the BBA, and the regulations thereunder, does away with the TEFRA audit regime that has been in effect since 1982.

Make no mistake, these new partnership audit rules are for the benefit and convenience of the IRS. And while the new centralized audit system largely accomplishes this goal of making partnership audits much easier for the IRS, it can create significant burdens for the partners subject to the new system if they fail to properly address key issues.

Under the BBA the IRS is generally allowed to adjust most partnership-related items for the tax years subject to audit (the “Reviewed Years”) at the partnership level. After making such adjustments, the IRS then calculates any potential underpayment by multiplying the net positive audit adjustments for partnership items by the highest marginal federal income tax rate in effect for the relevant Reviewed Year. Importantly, unless the partnership takes affirmative action through its newly-minted partnership representative, the default BBA rules grant the IRS authority to collect this underpayment directly from the partnership in the year of the adjustment (“Adjustment Year”).

Put differently, the BBA’s default rules will result in the partners in the Adjustment Year bearing the economic burden for the audit, even if they were not partners in one or more of the partnership’s Reviewed Years that gave rise to the adjustments. And, because the partnership must pay the tax, not the individual partners, the partners cannot use beneficial tax attributes, such as a lower marginal tax rate or suspended losses, to reduce or offset the tax liability.

Have I mentioned that these changes are solely for the benefit and convenience of the IRS?

Mercifully, the BBA gives partners 3 options to address or minimize the impact of the default rules:

-          Elect Out. In certain limited scenarios, the partnership representative may elect, on the partnership’s timely-filed tax return, to not be subject to the new centralized audit rules of the BBA. If a partnership elects out of the BBA, any partnership audit for that tax year will follow the pre-TEFRA rules. As many practitioners have noted, if the partnership qualifies to elect out of the BBA’s regime, there is no reason to forgo this election. To be eligible to elect out of the BBA, the partnership must have no more than 100 K-1s (including all indirect owners through parent entities) and the partners must all be individuals, C or S corporations, estates, or certain foreign corporations. Having other partnerships, trusts, and even disregarded entities (such as grantor trusts and single-member LLCs) as partners will prevent the partnership from being able to elect out of the regime.

-          Push-out. If the partnership cannot elect out of the new BBA regime, the rules permit the partnership to avoid paying the entity-level tax by having the partnership representative elect to “push-out” the adjustments to the partnership’s partners in the Reviewed Years. This option ensures the economic burden of the adjustments is borne by the partners in the years giving rise to the adjustments. To the extent the partnership is part of a multi-tier structure, the BBA rules also permit the push-out election to be made at each level (or requires an entity that fails to make the election to pay the entity level tax). It is important to note that the push-out election presents a number of administrative costs for the partnership that the partnership representative must weigh in deciding if the election makes sense. The partnership representative must make the push-out election within 45 days of the mailing of the notice of final audit adjustments.

-          Amended Tax Returns/ Pull-In Procedure. If a partnership fails (or is unable) to elect out of the BBA’s rules and does not make a push-out election, it will pay the imputed underpayment, unless one or more of the partners from the Reviewed Years amends its tax returns for the Review Years to reflect its share of the proposed adjustments. The IRS will reduce the partnership’s liability for the underpayment by any amount of the adjustment that a partner in the Reviewed Years accounts for on an amended tax return. Recognizing that the amendment process may present significant administrative burdens, including a potential restart of the statute of limitations for the amending partner, a Technical Corrections Bill created a simplified “pull-in” process. Under the pull-in process, the partnership’s liability for the underpayment is reduced by the amount paid by any partner from the Reviewed Years if that partner (1) substantiates the amount of tax that would have been owed if the partner had amended its returns for the Reviewed Years, (2) pays that amount, and (3) makes adjustments to its tax attributes. This process ensures the partners from the Review Years bear the burden of the adjustments without a higher interest rate or a new statute of limitations.   

Considering the far-reaching effect of the new BBA rules, it is also important for partners to consider who will act as the liaison between the partnership and the IRS. The BBA replaced the old tax matters partner with a new position––the partnership representative––who wields sole authority to act on behalf of the partnership in all matters relating to the examination of the partnership’s tax return, including administrative appeals, litigation, settlements, statute of limitations extensions, elections under the BBA, and payment of the tax liability. State law (such LLC or partnership statutes or state contract law) cannot alter or limit the duties of the partnership representative.

The designation of the partnership representative must be made annually and will remain in effect for that partnership year unless it is formally revoked with the IRS, even if the partnership changes its representative in later years. The partnership representative is not required to be a partner of the partnership, and, if the partnership fails to make an effective designation, the IRS may unilaterally designate the representative upon commencement of an examination.

Due to this monumental shift in the partnership audit regime caused by the BBA, owners of partnership or LLC interests should check in with their advisers to ensure the BBA’s new structure is addressed in their partnership agreement as they (or their CPAs) begin filling out the new Form 1065. At a minimum, partners should ensure they have addressed the process for selecting, removing, and binding the partnership representative. Further, partners should take time now to agree on how potential audits will be managed if the election out is not possible and contractually bind all current (and future) partners to such plan. Finally, to the extent possible, the partnership representative should make sure the partnership elects out of the BBA’s regime. While it may take years to see how audits ultimately play out under the BBA, taking these prophylactic steps now before any potential audit will minimize the impact of the BBA’s new audit regime on existing partnerships.